PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G369000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 205aa    MW: 22718.9 Da    PI: 8.2148
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G369000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.62.5e-39141151101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+
  Aqcoe2G369000.1.p  14 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPIPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQ 105
                        7*************************99**************************************************************** PP

             DUF260  92 aelallkeel 101
                        a+l +++++l
  Aqcoe2G369000.1.p 106 AQLMQVRAQL 115
                        ***9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.9713115IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-3814112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MASSNSTGTG TGSPCGACKF LRRKCAADCI FAPYFCSEQG PARFAAIHKV FGASNVSKLL  60
LHIPIPDRCE AVVTIAYEAQ ARIRDPVYGC VAHIFALQQQ VAYLQAQLMQ VRAQLANNLV  120
DARSNNHWSG NLVGRPHQNQ IYPPYMQSIS PQSSFDSADN TKDELPIQDM HIRDDLPFQP  180
CTRRRFTQTD LGELQAMAVR MMRE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263559.13e-97PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-73LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A151TUN03e-99A0A151TUN0_CAJCA; LOB domain-containing protein 16
STRINGVIT_07s0005g03030.t018e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-58lateral organ boundaries-domain 16